Zhu Lab

Recent publications

1. Li P#, Wei J#, Zhu Y*. (2023). CellGO: A novel deep learning-based framework and webserver for cell-type-specific gene function interpretation. Briefings in Bioinformatics, 25(1). https://doi.org/10.1093/bib/bbad417

2. Zhou Y, Tao L, Zhu Y* (2023). TempShift reveals the sequential development of human neocortex and skewed developmental timing of down syndrome brains. Brain Sciences, 13(7), 1070. https://doi.org/10.3390/brainsci13071070

Publications before 2019

3. Zhu Y#, Sousa AMM#, Gao T#, Skarica M#, Li M#, Santpere G, Esteller-Cucala P, Juan D, Ferrández-Peral L, Gulden FO, Yang M, Miller DJ, Marques-Bonet T, Kawasawa YI, Zhao H, Sestan N* (2018). Spatio-temporal transcriptomic divergence across human and macaque brain development. Science. 362(6420):eaat8077. (*Co-first author)

4. Sousa AMM#, Zhu Y#, Raghanti MA, Kitchen RR, Onorati M, Tebbenkamp ATN, Stutz B, Meyer KA, Li M, Kawasawa YI, Liu F, Perez RG, Mele M, Carvalho T, Skarica M, Gulden FO, Pletikos M, Shibata A, Stephenson AR, Edles MK, Ely JJ, Elsworth JD, Horvath TL, Hof PR, Mane SM, Noonan JP, State MW, Lein ES, Knowles JA, Marques-Bonet T, Sherwood CC, Gerstein MB, Sestan N* (2017). Molecular and cellular reorganization of neural circuits in the human lineage. Science. 358, 1027-1032. (*Co-first author)

5. Zhu Y#, Silbereis JC#, Pochareddy S#, Li M, Sestan N*. (2016) The Molecular Landscape of the Developing Human Central Nervous System. In Genomics, circuits, and pathways in clinical neuropsychiatry, T. Lehner, B. Miller, and M. State, eds. (Boston, MA: Elsevier). pp. 203-220. (*Co-first author; Book Chapter)

6. Zhu Y, Li M, Sousa AM, Sestan N*(2014). XSAnno: a framework for building ortholog models in cross-species transcriptome comparisons. BMC Genomics. 15, 343.

7. Kang HJ#, Kawasawa YI#, Cheng F#, Zhu Y#, Xu X#, Li M#, Sousa AM, Pletikos M, Meyer KA, Sedmak G, Guennel T, Shin Y, Johnson MB, Krsnik Z, Mayer S, Fertuzinhos S, Umlauf S, Lisgo SN, Vortmeyer A, Weinberger DR, Mane S, Hyde TM, Huttner A, Reimers M, Kleinman JE, Sestan N* (2011). Spatio-temporal transcriptome of the human brain. Nature. 478, 483-9. (*Co-first author)